Abstract The Bacanga River Estuary is socioeconomically important due to artisanal fishing and aquaculture. It is blocked by a dam and is under human pressure along its drainage basin, intensifying the eutrophication process. This study reports on the occurrence of phytoplankton blooms and trophic state (TSI and TRIX) at six sampling sites during the annual cycle. The estuary was divided into downstream and upstream regions. Higher salinity, turbidity, depth, and lower dissolved oxygen levels were found downstream; whereas, high levels of chlorophyll a and nutrient concentrations were observed in both regions. There were blooms of Leptocylindrus danicus (1.45 × 106 cells L-1) and Skeletonema costatum (1.89 × 106 cells L-1) downstream; whereas phytoflagellate proliferation, such as those of Chlamydomonas sp. (13.17 × 106 cells L-1), Euglena gracilis (7.84 × 106 cells L-1), and Euglena proxima (1.03 × 106 cells L-1) were recorded upstream, with Chlamydomonas sp. as the discriminant species of this zone. Both trophic indices (TSI; TRIX) indicated elevated trophic conditions for the estuary, classifying it as hypereutrophic. Nevertheless, TSI only showed a significant relationship with some specific phytoplankton blooms. Thus, TSI seems to be the trophic index with a better response in the assessment of estuarine ecological functioning.

ABSTRACT São Marcos Bay is an estuarine complex with semidiurnal tides that can reach more than 7 m during equinoctial spring tides. It is situated in the second largest Brazilian coastline and is subjected to continuous human activities holding an important port complex of Latin America. In order to contribute to the knowledge about the structure of the phytoplankton in a macrotidal systems, this study aims to evaluate the phytoplankton community and its relationship with environmental conditions in the São Marcos Bay. Five surveys in 2010 and 2011 were carried out on four sampling points during the rainy and dry seasons. Samples were taken during the flood and ebb phases at neap tides. Hydrological parameters were correlated with biological data (phytoplankton composition, abundance and biomass) using statistical analysis. The phytoplankton biomass (chlorophyll a) characterized the bay as quite productive (10.43±7.62 mg m-3) with the nanophytoplankton as the dominant fraction. Seasonal variation was observed in phytoplankton abundance with higher values (34,262±18,422 cells L-1) in the rainy season. Diatoms were the most important phytoplankton group, pointing out Nitzschia sp., Diploneis weissflogii and Synedra sp. as the dominant species. This study revealed that the composition of phytoplankton community was mainly influenced by the local dynamics, governed by macrotides, and precipitation regime that mostly contributed to the seasonal fluctuations of the environmental conditions, such as salinity, dissolved oxygen, and nutrients.